Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PRAD rs56212715 chr1:6722195 G/T 0.000162 484 29.23 31.32 30.73 KM Plot
PRAD rs56231006 chr7:4249626 G/T 1.42E-8 483 32.43 28.13 17.2 KM Plot
PRAD rs56241723 chr12:722834 G/A 0.000142 487 31.33 28.48 22.67 KM Plot
PRAD rs56246620 chr1:109816863 T/TC 7.69E-7 484 31.27 30.8 30.88 KM Plot
PRAD rs56261863 chr2:10480339 G/A 8.04E-10 487 30.27 33.25 10.03 KM Plot
PRAD rs56280639 chr8:10461880 C/A 1.3E-5 470 30.9 29.97 54.48 KM Plot
PRAD rs56285116 chr7:135164950 C/T 2.34E-9 489 30.3 32.52 3.03 KM Plot
PRAD rs56302319 chr10:99441760 A/G 9.1E-10 476 31.43 30.33 23.75 KM Plot
PRAD rs56322039 chr17:62979782 C/T 8.32E-9 490 30.78 31.37 19.63 KM Plot
PRAD rs56360746 chr11:93582392 G/A 2.36E-5 477 32.4 28.22 29.52 KM Plot
PRAD rs56369240 chr22:23474756 T/C 7.68E-8 491 31.07 29 9.65 KM Plot
PRAD rs56386213 chr11:36291554 A/G 5.98E-5 478 31.07 32.5 26.37 KM Plot
PRAD rs56402836 chr15:77081967 A/C 6.46E-5 485 30.8 32.77 18.65 KM Plot
PRAD rs56410881 chr17:62979783 A/C 8.32E-9 490 30.78 31.37 19.63 KM Plot
PRAD rs56773390 chr5:154271537 T/C 0 494 30.08 33.47 4.87 KM Plot